SE2630175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7143
  • Oryza sativa
  • SE2630175
  • hAT
  • Hat40
  • Chr11:1308310-1308926
  • TAGGGATG
  • TAGGGATGAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
     A            GAAACGATCGGAAAACAGTCTCAACCATTTCCGTAACCATATTTTTCTCGGAAACGAAATTGGAAACGGTAAAGTCGGAAACAAAAACGATATCGGAAATATCGGAAAACCGGAAACGGAACAATACGGACGGAAACATGTCGGTACAGATCGGAAACCGGTAACAAATACGGAAACATTAAACTATAAAAACATATATTTAACTTTACATAAGTATGTTATATATATATATACATAAATTCAAGCTTATACTATATAAATTATAAATTAACTTCATTTTAGCCATGTAC
TAGGG TGAAAACGGTCG                                                                                                                                                                                                                                                                                                  
||||| ||||||||||||                                                                                                                                                                                                                                                                                                  A
ATCCC ACTTTTGCCATT                                                                                                                                                                                                                                                                                                  
     C            GCCATTAATGGCCGGCTGGCCGCAAGTAAAAGCTGAAAGATGGCCGGCTCGGTATACCTTTACCATTAGCTGGCTTTGTTTTTACCTTTACCATTTTTTATACCTTTACTTTTGCCTTTACCAAAACGACAATATGGCTAGCAAAGGCATAAATGGCATAAGAGCGCCTTTAATGGCAAAGAATATTATACCATTAATGGCATAAGATTTATACAGCTATAATATCCTGTACAGATATGAATTGGGTGTCGAATATCTAACTTACTGAGAAGTTATTTTAGAGATTGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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