Plant MITE

SE2630176

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7144
Oryza sativa
SE2630176
hAT
Hat42
Chr12:18367784-18367944
CAAGGGTG
GGGTGGATTTAGAGTGTAACAAGTGAGGGCCTTGG

Secondary structure and sequence

TSD TIR

5'

3'

CAA       T      T   A  --    A     TT  C       TAAATTTGCAGTGAGTGGGGACAAATATCCCTTG
   GGGTGGA TTAGAG GTA CA  AGTG GGGCC  GG CCCCACT                                  
   ||||||| |||||| ||| ||  |||| |||||  || |||||||                                   
   CCCGCCT AGTCTT CAT GT  TCAT CCCGG  CC TAGATGG                                  
GTC       C      T   C  AC    C     TT  -       CGAGTCCATCTGATTAATTCCTTCATTTTTCACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630176

CAAGGGTGGATTTAGAGTGTAACAAGTGAGGGCCTTGGCCCCCACTTAAATTTGCAGTGAGTGGGGACAAATATCCCTTGACACTTTTTACTTCCTTAATTAGTCTACCTGAGCGGTAGATCCTTGGCCCCTACTCATGCTACTTTCTGACTCCGCCCCTG

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