SE2630177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7145
  • Oryza sativa
  • SE2630177
  • hAT
  • Hat43
  • Chr04:21735504-21735895
  • AGGGAGTG
  • GGGAGTGGATTCTAATCCCTCGAGGGGATATCCCCTCGT

Secondary structure and sequence

TSD    TIR
5'



3'
A     TGG                     ATC       ATACCTTT  C   T   TT G  GC    A           A    A     A          AGA       -G   CC   T G C   C      -CAT             C     A      AAC                 -A   A  C    C
 GGGAG   ATTCTAATCCCTCGAGGGGAT   CCCTCGT        TT TTC AAA  C AT  AAAT GTTGTGAAAAA TCTG AAAAA TTGACAATGT   GTATAAT  ATA  TAT A T CAC AAAATT    GTTCAAATTCGAT TACAC TCGAGA   AAAAAAGACAAATTTAG  TAT AA AGTA 
 |||||   |||||||||||||||||||||   |||||||        || ||| |||  | ||  |||| ||||||||||| |||| ||||| ||||||||||   |||||||  |||  ||| | | ||| ||||||    ||||||||||||| ||||| ||||||   |||||||||||||||||  ||| || |||| A
 CCCTT   TAAGATTAGGGAGCTCCCCTA   GGGAGCA        AA GAG TTT  G TA  TTTA CAATACTTTTT AGAC TTTTT AACTGTTGTA   TATGTTG  TAT  ATG T A GTG TTTTAG    CAGGTTTGAGTTG GTGTG AGCTCT   TTTTTTCTGTTTAAGTC  ATA TT TCAT 
      TGA                     CAA       --------  C   -   TT G  GA    C           A    C     A          -AG       TG   AT   T G A   -      AATT             A     C      ATA                 GC   C  A    C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End