SE2630178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7146
  • Oryza sativa
  • SE2630178
  • hAT
  • Hat44
  • Chr08:24796961-24797151
  • CAGGGGCG
  • CAGGGGCGGATCTAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
           C  G  AAAAATAG    -   A     ATAAACTACATCAGCATAAGTCGAACCTCCAGTCCCCACATCCTATGGATCTATGGGAAAA
CAGGGGCGGAT TA AA        TAGT GGG GCTGA                                                             
||||||||||| || ||        |||| ||| |||||                                                             A
GTCCCCGCCTA AT TT        GCCC CGC CTCCC                                                             
           A  G  --------    C   -     CAGAACTCTGAGGTGATGGCGAGGGCCCTGTCACCTCTGGGGGGATTCGGGGGTGATTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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