SE2630179

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7147
  • Oryza sativa
  • SE2630179
  • hAT
  • Hat45
  • Chr11:4223390-4223902
  • CAGGGTTT
  • CAGGGTTTCAAAAACCGCCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
      TTC            GG      T       ACCCGGCGGTACGGCGGTTACCGGCGGTAACCGCGGTAACCGCGCAAAACCGCGACAAATTTACAAATCGAAATTTGAATTCAAAAATTTGGGCAAACCGCGCGGTTTGGCGCGGTTACCGCGCGGTTTGACGCGGTAACCACGCGGTTTGGCGCGGTTACCGCGCGATGTGTAATGGGTTGCACAGTAACGGGCCGGCCCATTTTTTTTCTTTTTCCAA
CAGGGT   AAAAACCGCCGG  GCCCGG TACCGCC                                                                                                                                                                                                                            
||||||   ||||||||||||  |||||| |||||||                                                                                                                                                                                                                            T
GTCCCA   TTTTTGGCGGCC  TTGGCG CGCCAAT                                                                                                                                                                                                                            
      CAC            -A      -       GGCGCCAATGGCGGGCATGGCGCCCCCATGCCAATGGGCATGGCGCGCCATGCCAAATTATTTTAAGCAGGTTTAAGTTTTTAAATTTTTTTTTTTCTTTTTTTTAGTTTTTTTTATCACTTCCATCACGAACTAAATATCACAAAATACCACTTCTTTAAAGAGTTTTTTCTCATTATAAATAAGTTTAAACTCTCGTTTTGCCTCTTATTTAAACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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