Plant MITE

SE2630180

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7148
Oryza sativa
SE2630180
hAT
Hat5
Chr04:34945819-34945993
CATAGTCA
CATAGTCACAGG

Secondary structure and sequence

TSD TIR

5'

3'

            AAA     ---T   T ----  A CGATCCTCGACCCGGGAACGCCGTCCCCGTCCCGAAAACGCGGGGTCATTTTCGTC
CATAGTCACAGG   CGGGG    CGG G    GC G                                                        
||||||||||||   |||||    ||| |    || |                                                        C
GTATCAGTGTTT   CAAGG    AGC T    TA G                                                        
            ---     ACCC   - ACCC  - TTCCTTACCCCAGCTCCTTGCACTATGCGATGAACGCTCTCCAAAAATGTTCCACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630180

CATAGTCACAGGAAACGGGGTCGGTGGCAGCGATCCTCGACCCGGGAACGCCGTCCCCGTCCCGAAAACGCGGGGTCATTTTCGTCCCCACCTTGTAAAAACCTCTCGCAAGTAGCGTATCACGTTCCTCGACCCCATTCCTTGATCCCATCGACCCAGGAACTTTGTGACTATG

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