Plant MITE

SE2630182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7150
Oryza sativa
SE2630182
hAT
Hat47
Chr08:4574477-4575062
CAGGGCCG
CAGGGCCGGCCCTAGGGG

Secondary structure and sequence

TSD TIR

5'

3'

         C   A    -----    CA   CGTGCGGCCACCCGAGGCCCCCAAAATCTAGGGGCCCCCTATGCACATACAGTATATATACTATGTATTGTATAATTCTAGTCCACGTGCCATGGATCTATATTAAGTTAGATAGCTGAATAGCCTAATACAGAAAATGAAATTTAGTCCATCGTTAGGCCTGTTTTAACGAAGCCGAAGCAATCTTCATTTGACTCCTGTCGCTTTGCCTTGATCACATCACGCCACTCACGTCATGCCGCCTCGATCACGTCACGCTGCTCCT
CAGGGCCGG CCT GGGG     GGGT  GGC                                                                                                                                                                                                                                                                         
||||||||| ||| ||||     ||||  |||                                                                                                                                                                                                                                                                          
GTCCCGGCC GGA CCCC     CCCC  GGG                                                                                                                                                                                                                                                                         
         A   -    AAAAC    --   TCCCGTTTTTGAATATACCTCCGGGGATGTATATATGTATTTGATTAAATATATAAATATATCAGACTATTTGTGTATGGTAAATTATAAGCTACACTGTTTTAATAGATATATATTGTAAAATTTTGAGGTTACTCTTTATTTATCGTCATCGCTCGTCTCTTCAGCTGGCCGCCTGCTAACTGTGCTCGCACCAATGACCGCTCAGCGCTAAACGGTTGAACGACAAAAGCAAACGCTCTGCGGCTCTTCAGTGGCTCTCGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630182

CAGGGCCGGCCCTAGGGGGGGTCAGGCCGTGCGGCCACCCGAGGCCCCCAAAATCTAGGGGCCCCCTATGCACATACAGTATATATACTATGTATTGTATAATTCTAGTCCACGTGCCATGGATCTATATTAAGTTAGATAGCTGAATAGCCTAATACAGAAAATGAAATTTAGTCCATCGTTAGGCCTGTTTTAACGAAGCCGAAGCAATCTTCATTTGACTCCTGTCGCTTTGCCTTGATCACATCACGCCACTCACGTCATGCCGCCTCGATCACGTCACGCTGCTCCTGCGCTCTCGGTGACTTCTCGGCGTCTCGCAAACGAAAACAGCAAGTTGGCAAATCGCGACTCGCCAGTAACCACGCTCGTGTCAATCGTCCGCCGGTCGACTTCTCTGCTCGCTACTGCTATTTATTTCTCATTGGAGTTTTAAAATGTTATATATAGATAATTTTGTCACATCGAATATTAAATGGTATGTGTTTATCAGACTATATAAATATATAAATTAGTTTATGTATATATGTAGGGGCCTCCATATAAGTTTTTGCCCTGGGCCCCCAAAACCCCAGGACCGGCCCTG

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