SE2630184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7152
  • Oryza sativa
  • SE2630184
  • hAT
  • Hat49
  • Chr01:27918613-27918826
  • CAGGGTTG
  • CAGGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
       -----------      -  -----  GACCGAAATTTCCAAGTGACCCCCGATACGATATTAATTCGGCCGAAATTTTTGAATTTTTCAATTTTTTCATGAATTTGG
CAGGGTT           GGAAAT TT     CG                                                                                 
|||||||           |||||| ||     ||                                                                                 A
GTCCCAA           AAGTCC AA     AG                                                                                 
       GTGAGATAGCC      C  AAGAT  CCCCCAGTGGCTTTAGGACTTTAAAGCCAGGTTTTAAAGGCTTTAAAATTTGTTTTAAATCAACTTAAACTTGTTTATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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