SE2630185

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7153
  • Oryza sativa
  • SE2630185
  • hAT
  • Hat50
  • Chr05:19830379-19830588
  • CAGGGTTG
  • CAGGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
        ----      C --   - TGAAATTTCCGAAATTTTGGTCACTACGGACCCCTCCGATATGATATTATTTCGGCTGAATTTTTTTAAAAAAATTCATGAA
CAGGGTTG    GAAATT C  GGA A                                                                                  
||||||||    |||||| |  ||| |                                                                                   
GTCCCAAT    AAAGCC A  TCG C                                                                                  
        TTAA      - AA   A TAAACTAGCCTGGAGTGGCTTTATGTGTTTAAAAGTTTTAAAGCTCGTTTAAATTCAACTTAAACTTGTTTATAATGGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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