SE2630186

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7154
  • Oryza sativa
  • SE2630186
  • hAT
  • Hat50
  • Chr02:7777818-7778026
  • CAGGGTTC
  • CAGGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
       CACTATATCGGCTTA   C  TTGA   ---- GGGTCACCGAAATCCCGAAATTTTGAAAATTTCGGTCCAAAATTTTCGAAAATTTGAACAAAATTTAGTTGAATTT
CAGGGTT               GGG TT    TCG    G                                                                            
|||||||               ||| ||    |||    |                                                                             
GTCCCAA               CTT TA    AAG    T                                                                            
       --------------C   -  ----   ACAG AAAGCCAGGGGAGGCTATGCTATAATGAAGCCGGCTTTAAAAAGTTAAAAAAGTACTTAAACCCATTATAAACAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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