SE2630187

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7155
  • Oryza sativa
  • SE2630187
  • hAT
  • Hat51
  • Chr10:11169162-11169320
  • CAGTGGCG
  • CAGTGGCGAGGCTATATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
   T          -     TGTT        AG   GC  --A   ACCCCCAAATTCCT      TCACTTAAA      A AAT
CAG GGCGAGGCTA TATTA    GCGGGGGG  GCA  AC   TGA              AATTTC         AACACT G   
||| |||||||||| |||||    ||||||||  |||  ||   |||              ||||||         |||||| |    
GTC CCGCTTCGAT GTAGT    TGTTCCCC  CGT  TG   ACT              TTAAAG         TTGTGA C   
   C          C     --TT        -A   GA  ATA   ----CTTAAATCTT      ----TCATG      - ATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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