Plant MITE

SE2630188

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7156
Oryza sativa
SE2630188
hAT
Hat52
Chr06:26733576-26733728
CAGGGGCG
CAGGGGCGAAGCTA

Secondary structure and sequence

TSD TIR

5'

3'

   G          GCATCAAAACAA         --TTC    G   A   A   AA     G --AC       TAC
CAG GGCGAAGCTA            GGGGTGCAC     CATT AGA TCT TAA  TTTCA T    AACACTG   
||| ||||||||||            |||||||||     |||| ||| ||| |||  ||||| |    |||||||   A
GTC CCGCTTCGAT            CCCCATGTG     GTGG TTT AGG ATT  AGAGT A    TTGTGAT   
   A          -ATAACACAAAC         TACTT    G   A   -   AA     G ATTT       CTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630188

CAGGGGCGAAGCTAGCATCAAAACAAGGGGTGCACTTCCATTGAGAATCTATAAAATTTCAGTACAACACTGTACATTCTAGTGTTTTTAAGTGAGAAATTAGGAATTTGGGTGTTCATGTGTACCCCCAAACACAATATAGCTTCGCCACTG

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