Plant MITE

SE2630189

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7157
Oryza sativa
SE2630189
hAT
Hat53
Chr04:26212611-26212898
CAGGGCCG
CAGGGCCGGCCCTGA

Secondary structure and sequence

TSD TIR

5'

3'

               CTTTT     GCC   T   GAAAAAAAA    GGCCCCCATTCACCATAAAAATACAAGATAATATTTAAAAACTCATTGTCATTAATGAATTTCACACTAATCAGTTTAAAATACAATCAAGAAGTCACGATATG
CAGGGCCGGCCCTGA     CAGTG   CGG ACG         TGAA                                                                                                        
|||||||||||||||     |||||   ||| |||         ||||                                                                                                         
GTCCCGGCCGGGACT     GTCAC   GCC TGC         CACG                                                                                                        
               ---CT     ---   -   ---------    CTGACGTGACCCGGAGATTTTTAATCCCCGGAGGTTTTTTACATATGATACCATAGTCTAGACTATCCCAATCTCCTTTCTATCTTTTGGCTAGCCGCTAGCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630189

CAGGGCCGGCCCTGACTTTTCAGTGGCCCGGTACGGAAAAAAAATGAAGGCCCCCATTCACCATAAAAATACAAGATAATATTTAAAAACTCATTGTCATTAATGAATTTCACACTAATCAGTTTAAAATACAATCAAGAAGTCACGATATGCTCGATCGCCGATCGGTTTTCTATCTTTCCTCTAACCCTATCAGATCTGATACCATAGTATACATTTTTTGGAGGCCCCTAATTTTTAGAGGCCCAGTGCAGTCGCACCGTCCGCACTGTCTCAGGGCCGGCCCTG

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