SE2630190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7158
  • Oryza sativa
  • SE2630190
  • hAT
  • Hat53
  • Chr06:10929016-10929364
  • GGGCCGGC
  • GGGCCGGCCCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
            --A        - GGCTCAGTGTGGAAAAAAAAATGAAGGCTCCCATTCACCATAAAAATACAAGATAATATTTAAAAACTCATTGTCATTAACGAATTTCACACTAACAAGTTTAAAATACCAAAAAGAAATATCTCTAGATCATTTAAAACAATTTCTTCTA
GGGCCGGCCCTG   CTTTTTGG T                                                                                                                                                       
||||||||||||   |||||||| |                                                                                                                                                        
CCCGGCCGGGAC   GTCACGCC G                                                                                                                                                       
            CCC        C TCACGCTGGCGTGACCCGGAGGTTTTTAATCCCCGGAGGTTTTATACATATGATATCATGGTTCGGACTATCTGATGAAACACGTAACTCTTCTACGACAATCTACTCTAACAATAACTGTGATAGTAGTGACTAAAACGTAGACTTGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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