Plant MITE

SE2630191

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7159
Oryza sativa
SE2630191
hAT
Hat53
Chr04:30877982-30878266
CAGGGCCG
CAGGGCCGGCCTGGGCAGTGCGGACGGTGC

Secondary structure and sequence

TSD TIR

5'

3'

            G   -----A   C GA      --A   GTATTAGGTCTCCAAAAATTAGAGGCCTCCAAAATATATGTACTATGGTATCAGGCCTGATAGGCTTAGAGGAAAGACAGAAAACCAATCGACGATCGAGCATAT
CAGGGCCGGCCT GGC      GTG G  CGGTGC   ACC                                                                                                         
|||||||||||| |||      ||| |  ||||||   |||                                                                                                         C
GTCCCGGCCGGG CTG      CAC C  GCCACG   TTT                                                                                                         
            A   AAAAAC   - GG      CTT   TTTACATCCGGGGGTAAGTGGTATTTTTATATTCTATTATAAATTTTTGAGTAACAGTAATTGCTTAAAGTGCGATTATTCGAATTTTATGTTAGTCCGTTAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630191

CAGGGCCGGCCTGGGCAGTGCGGACGGTGCAACCGTATTAGGTCTCCAAAAATTAGAGGCCTCCAAAATATATGTACTATGGTATCAGGCCTGATAGGCTTAGAGGAAAGACAGAAAACCAATCGACGATCGAGCATATCGTGATTGCCTGATTGTATTTTAAGCTTATTAGCGTGAAATTCGTTAATGACAATGAGTTTTTAAATATTATCTTATATTTTTATGGTGAATGGGGGCCTACATTTTTTTTCGCACCGGGCCACCAAAAAGTCAGGGCCGGCCCTG

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