SE2630192

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7160
  • Oryza sativa
  • SE2630192
  • hAT
  • Hat54
  • Chr10:19532631-19533145
  • CAGGGTTC
  • CAGGGTTCACAATTCCGATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
       C  A       T  AAATC   C   TTCCGTGAAATTTTGAGGTTTCGACGAGGCTCGAAAGTAGAAGCCGTATGAGATTTCGATGAGTTTCATCTAAATTCAAATTTAAATTGATAAAAAAATAAAAATCAAATAAAATCTTATAAATAGTATGATATTCATAGAACTTATTGGGTTATAAATTTTTGAAAAAAAAATTGATGTATCGTGTGTATTTACTGAAATTTACGAGAGGAAAGTAAAGAATAAT
CAGGGTT AC ATTCCGA GA     GGT GAA                                                                                                                                                                                                                                  
||||||| || ||||||| ||     ||| |||                                                                                                                                                                                                                                   
GTCCCAA TG TAAGGCT CT     TAA GGC                                                                                                                                                                                                                                  
       A  C       -  -ACCA   -   AAAGCCCGAGACCGCCTTACCGCCAAAAGCACTTTAGGCCACCTTTCGGCCATCTAAAACTTGTTTAAAGTATTTGGTTTAAAACTTATGTTTAAGTAACTCAAATAGCTATTCGAACGCTTTTGGTCGGTCGAAACCACTTTAAGGCTCGCTTTAGAAACTTTAAAGTTGGCCATTGATCTTTTTCTTTTTCTCCATTTGACTTTAACAAAAGTAAAAAATCAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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