SE2630193

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7161
  • Oryza sativa
  • SE2630193
  • hAT
  • Hat54
  • Chr03:27705453-27705942
  • CAGGGTTT
  • CAGGGTTTACGATTCCGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                   GAAATC   TCA   TTCGCGAAATTTTGACGTTTCAACGAGGCTCGAAAGTAGAAACCGTCTAAGATTTTGAGGAGTTTCATCCAAATTCAAATTTAAATTGATAAAAAAAGAAAACAAATCAAATAAAATCTTATAAATACTATGATATTCATAGAACCTATTGGGATATAAATTTTCGAAAAAAAATGATGTATTGTGTGTATTTACTTAAACTTACATCAGGAA
CAGGGTTTACGATTCCGAC      CGG   GAT                                                                                                                                                                                                                     
|||||||||||||||||||      |||   |||                                                                                                                                                                                                                      
GTCCCAAATGCTAAGGCTG      TAA   GGC                                                                                                                                                                                                                     
                   -TATGG   ---   AAAGCTCATAACCGCCTTAAGCCTTAAAGCGCTTTAGGTAACCTTTTGGCCATTTAAGGCTTGTTTAAAGTATTTGGTTTTAAACTTATGTTTAAGAAGACTTAAACGGCTGTTCAAGAACTTTTGGTGAGCCAAAACCGCTTTAAGGCTAGCTTTAGTAGCTTTAAAGCTAGTCATTAAACATTATCTCCACTAAACGACTTTAAGAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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