SE2630194

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7162
  • Oryza sativa
  • SE2630194
  • hAT
  • Hat55
  • Chr02:2985322-2985523
  • CAGGGTTC
  • CAGGGTTCATA

Secondary structure and sequence

TSD    TIR
5'



3' 
       C      -   ACAAAAACCGGTCAAATTCCATGAAATTTCGATGTTTACATGGCTCGGAATTAAGTTTCGATTGGAATTTCGAAGGATAAACA
CAGGGTT ATAATT CCG                                                                                   
||||||| |||||| |||                                                                                   A
GTCCCAA TGTAAT GCC                                                                                   
       A      G   AACTGGTGATTTAAAGCTTGGGGTAGCCATAGTGGCAAAAGCTATTTAAAACTAGCCAAAAGCTATTTAAAGCTGGTTTAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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