SE2630195

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7163
  • Oryza sativa
  • SE2630195
  • hAT
  • Hat55
  • Chr11:5550315-5550529
  • CAGGGTTC
  • CAGGGTTCACAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
       C   G T   ACGAAAACCGGCCGAATTTCGCGAAATTTCGATGTTTCAACACGGCTCGGAATTAAGTTTCGATTGGAATTTCGAAGGTTGAACAGTAGAT
CAGGGTT ACA T CCG                                                                                           
||||||| ||| | |||                                                                                            
GTCCCAA TGT A TAG                                                                                           
       A   G -   CCAACTGGTGATTTAAAGCTCAGAGTAGCCATAGTACCAAAAGCTATTTAAAACTAGCCAAAAACTATTTAAAGCTGACTTAAAGCTGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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