Plant MITE

SE2630196

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7164
Oryza sativa
SE2630196
hAT
Hat55
Chr08:22931144-22931336
CAGGGTTT
GGTTTACATTACCG

Secondary structure and sequence

TSD TIR

5'

3'

CAG        TTA   ----   GATCATT         -- CCCTATCTGTATCAT --  TTTCGATAAATTTTGATTAAATTCGATCAAATCTACTGTTTAACCTTC
   GGTTTACA   CCG    GTT       AAATTTTGA  G               G  GT                                                
   ||||||||   |||    |||       |||||||||  |               |  ||                                                A
   CCAAGTGT   GGC    TTT       GGCCAGCTT  G               T  CT                                                
GTA        TAA   TGTT   -------         AA --------------- CG  TTAAAGATACAAAGTTGTGCCGAACCTTAATTCAAAATTAACTTTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630196

CAGGGTTTACATTACCGGTTGATCATTAAATTTTGAGCCCTATCTGTATCATGGTTTTCGATAAATTTTGATTAAATTCGATCAAATCTACTGTTTAACCTTCAAAATTTCAATTAAAACTTAATTCCAAGCCGTGTTGAAACATAGAAATTTCGCTGAATTCGACCGGTTTTTGTCGGAATTGTGAACCATG

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