SE2630197

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7165
  • Oryza sativa
  • SE2630197
  • hAT
  • Hat6
  • Chr05:550968-551492
  • TAGGGGTG
  • TAGGGGTGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
            --      GAGCCAAGCCTGGCTCGGCTCGGCTTGCAGTGGCTCGCAAAAAACTAGGATTGGCTTGGCTCAGCTTGGTTAGGGAAACAAGCTAAAACTTAAGCTCGGCTCGGCTCGTTTCCTGGCTCGAGCCAGCTCGAGCTGGCTTGCAAGCTTTCCTGTTGAAACACCTATTCATATATATTTTGTAATTATTGAAAAAAAGTAAAAACAAATCATCAACATGTAAAATTTAAATAAGTTTTTATATTC
TAGGGGTGGAAA  CGAGCC                                                                                                                                                                                                                                                   
||||||||||||  ||||||                                                                                                                                                                                                                                                   A
ATCCCCACTTTT  TTCGAG                                                                                                                                                                                                                                                   
            CT      CCCAAGCACTCGAATCGAGCCGGAACCGAGCTCGAACCAACCGAACCGAGCCGAGCATTCGGTTTGTTCGGTTCGGGTTCGGAGGAAAAATCGAGCAACGACTTTACTCGGCTCGGCTCGATCGAGCGCTCGGCGAACAAAACCGAGCGCTCGGATCCGGTAGCACACAAATATAACTAATAAAATGAAATATATCACAATAATAAACAGTTGAACTTTAAATAGTGATTCTAAAACTTCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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