SE2630198

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7166
  • Oryza sativa
  • SE2630198
  • hAT
  • Hat56
  • Chr07:26199504-26200113
  • TAGGGATG
  • TAGGGATGAAAACGGAGCGGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  TGCTCATACCATATTCGTTTTCATATTTTTTACCGGATACGAAAACGAATACGGATAGCTCGAATACGGAAACAAATACGGATTATCTCGAATACGAATAAGAATCGAATATGATCGGACACGAATACAGAAACAAATTTTTTCTCGGAACACGAAAACCAACTCAACTTCTAATGGAAACAAATATCAACATATATAATTAGCTCATTTTATATAAAATGAGGTATAATTTATAAATATTTTTTAAAATTTAAATAATATTAATAGTATG
TAGGGATGAAAACGGAGCGGATACGGACGGATAA                                                                                                                                                                                                                                                                               
||||||||||||||||||||||||||||||||||                                                                                                                                                                                                                                                                                
ATCCCTACTTTTGCCTCGCCTATCAAAGGCAGGC                                                                                                                                                                                                                                                                               
                                  GAGGCCTGTTTTTGCCTATGCCTATGGAAAGTCTAGCCTATTAAGAGCCTATCAAGCCTATGCCTATGCTTATGCCTATAAAAGAGGGCCTATGCTTATGCTTATACCATGGTCCCAAAGTCAGCCTATGCCTATTATTAAGCCTATAGGCCACTTGTCACGATAAGCCTATAGGCGTCCTGGGTACTCTGTATGGGGTAAAGAAAGATTGAGATATTGGAAGTTATATGGAAATATCTAAAATTATCATCAAATAGAGAATTGTGATCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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