SE2630199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7167
  • Oryza sativa
  • SE2630199
  • hAT
  • Hat56
  • Chr04:19931609-19932254
  • TAGGGGTG
  • TAGGGGTGAAAACGGATCGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                T     A   --  TG   - GATC  C TCGAATCCGTTCGAAACGAGGATATGGTATGGGCTTTTCGAAATCCGGGGGATACGGATGCGGATAGTATGAGATGGATGCGGATGCGGATGCGGATATGGTGTCTCTAAAATCCGACATTATGTGATAAGCCGTTTGCCGGATAATCCGAGATTATCAACATATATAACCACTCTATCTATTCTATATAACATAAGTTGGTACATCCAATGCCCTAATTCATTAATTAACATAGATTTTTAAGTCTAAGGCTTTTATCGTCTCATGTCACACTCACGTAGCT
TAGGGGTGAAAACGGA CGGAT ATA  TC  ATC C    CG T                                                                                                                                                                                                                                                                                           
|||||||||||||||| ||||| |||  ||  ||| |    || |                                                                                                                                                                                                                                                                                            
ATCCCTACTTTTGCCT GCCTA ACC  TC  TAT A    CC A                                                                                                                                                                                                                                                                                           
                C     A   TG  --   T ----  - GTATGGTATAGGATTTGGTATTAAAAATTCGGCTAAGCCTCGTCCACGCCTATAACATGCCTACGCCTACGCCTCGCCTAACAAAGCCTACAGTCTTTATCACGCCTTAGCCAAACTTTTACCTAATTTAAATAGCCTACAATGCACATATACGTTAGTTACGTTTTAGCTCAATCGTTAGAGTCCTTGTTATTATGTTATTAGGTATTTACTGGGTAGCATTATTCATATACTAATTCACGATTTGTTGTACTTATGTACTACAGGTATTATATTTTTTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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