SE2630200

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7168
  • Oryza sativa
  • SE2630200
  • hAT
  • Hat56
  • Chr03:17002815-17003493
  • TAGGGGTG
  • TAGGGGTGAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
             AGA      T   ACGGATAGTGGCCATACCATATCCTAAACCATATTTTTTGAGCGGATTCGAAGCGGGTGCGGATAGTGTACGAATGCGGATGCGGAGCGGATTGTTTTGGATGTCGGAAATGGTGCGGGGTCGGTGCGGAATCGGTTCGGAAACGGATTAAATTTATCGGATGTTACGTGTATATACAATCAATGCAACATCGAGTTATTAATCCAAGGAACAATAATATAATAATCAATAAATGACCCGTCGTAATAATTATATGATTAAGTGCTAAACAACATGAACACATGATGTCCATAATATAAAAAAATATAGCTAGTG
TAGGGGTGAAAAC   GCGGAT CGG                                                                                                                                                                                                                                                                                                                           
|||||||||||||   |||||| |||                                                                                                                                                                                                                                                                                                                           A
ATCCCCACTTTTG   CCTAAC CTA                                                                                                                                                                                                                                                                                                                           
             ---      -   TTATAGACTAGGTTAGGCGAGGCTTAAGCAGGCTTTGCTCCTATACCATACCCTAAAATCTTTAGGCCGTCTATGCCTATGCCTACGCCTATCATATTTCGCCTACGCCTATACCATATAGATTTTAGGCCATCTACACCTAATAGGCTGTAACAACAGTTTAATAGGCTATTCGGCAAACGACCTATTATACTTTAATAGTTGTATATATTGTGAGATAGATAACGTATATTGTATTCAACCATATAGGTTATGGGATTAAGTAGTTAATTGTTTCTAAAAAATCAGATTCCGAAAATAGCAGAGTACAGTGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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