SE2630201

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7169
  • Oryza sativa
  • SE2630201
  • hAT
  • Hat57
  • Chr02:10416113-10416266
  • TAGGGATG
  • TAGGGATGCAAGCGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
            C   AC   C   -- A  TTTTTTTTTTCCGGCTTATCCCACTTCTAGTTTATTTTTTCTTCTAAAT
TAGGGATGCAAG GGG  GGG AAG  C GG                                                 
|||||||||||| |||  ||| |||  | ||                                                  
ATCCCTACGTTC CCC  ATC AAG  G AT                                                 
            A   --   -   GC -  GGACATATTTTTGGTCGAACGATCACATAAAGAGCATACCATCAAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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