SE2630202

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7170
  • Oryza sativa
  • SE2630202
  • hAT
  • Hat57
  • Chr12:2469658-2469811
  • TAGGGATG
  • TAGGGATGCAAGTGGGTAGTCCCGCTATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
               -  -------------------  T      -   -  CATAAAAACCCACTTG           -C  ACA   TAGTA
TAGGGATGCAAGTGG GT                   AG CCCGCT ATC CA                CTAGTTTATTT  TC   TGG     
||||||||||||||| ||                   || |||||| ||| ||                |||||||||||  ||   |||     T
ATCCCTATGTTCGCC CA                   TC GGGCGA TAG GT                GATCAAATAAA  AG   ATT     
               A  CCCGTTCTCCTAAAAAAAA  -      A   A  -------------AAA           AA  AAG   TAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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