Plant MITE

SE2630204

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7172
Oryza sativa
SE2630204
hAT
Hat58
Chr08:5570327-5570436
TAGGGCTG
TAGGGCTGTAAGTGGGTCAGCCGCGAACCCACTTATAGATCAAAATAAGCGG

Secondary structure and sequence

TSD TIR

5'

3'

     C         G C G       -           ATC         G GT
TAGGG TGTAAGTGG T A CCGCGAA CCCACTTATAG   AAAATAAGC G  
||||| ||||||||| | | ||||||| |||||||||||   ||||||||| |  T
ATCCC ACATTCACC A T GGCGCTT GGGTGAATATC   TTTTATTCG C  
     C         G T G       T           CGA         G AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2630204

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2630204