SE2630205

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7173
  • Oryza sativa
  • SE2630205
  • hAT
  • Hat59
  • Chr11:7739341-7739977
  • TATAGATG
  • TATAGATGGCCAAAGGGCCCGCCCGGCACGGCCCGGCCCATGCACGGT

Secondary structure and sequence

TSD    TIR
5'



3'
         C          ---     GC      C    C   -           AC  CCCA      ATC               GATA     TTCGTGCCGGGCCGTGCCGGCCCATGGGCTGCACCTCCCGCCCAGGCACGGCCCACCAGCTGTCGGGCCGTGCCGTGCCAGCCCGAAGGCATGCGTGGCCCATCGGGCTTTTATAAAATAAGTCTATTTTTCGTCCCTCCTCTTTGGGCTATTTCATGTATAGCTAAAATAAGTCTATTTTCTGTCCCTCCTCTTTGGGCTGACATATGTATAGCTAAAACAAGTCTATT
TATAGATGG CAAAGGGCCC   GCCCG  ACGGCC GGCC ATG CACGGTTGGGC  GG    GCAGCC   GGGCCGGCACGGCCC    GGCAC                                                                                                                                                                                                                                      
||||||||| ||||||||||   |||||  |||||| |||| ||| |||||||||||  ||    ||||||   |||||||||||||||    |||||                                                                                                                                                                                                                                       
ATATCTACC GTTTTCCGGG   CGGGC  TGCCGG CCGG TAC GTGCCGTAAAA  CC    AGGCCG   GGTTCGTGCTGTGCC    GGGCT                                                                                                                                                                                                                                      
         C          CTC     --      A    A   C           --  ----      ---               ----     GCCTCCAGTCCGGGCACGGCCGGGCCGGGCTGGTGGCCCGGTACGGACCCGGGGAGGTGACCGTGCAACCCGGCCGGGCCGTGCTACCCGGCCGTCGATCCGGGCTATGTTTTTTTTTTATACCCTCATTTTGATCTGTATAATATACGGTACCTACTTTCTTATCCCTGGATTTTATCTGAAATATATATATATATATATATATACAATCGGCTTCTCCTCCCTACCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End