SE2630206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7174
  • Oryza sativa
  • SE2630206
  • hAT
  • Hat59
  • Chr07:18269214-18269814
  • TATAGTTG
  • TATAGTTGGCCATGTGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
              T       -    CACGGCACGGCCCAGGCCCGGCCGTGCCTGGGCCGAGGCTTGTCGGGCCGGCACGGCCCGACCGACGCACCGGGCCGTGCCGTGCCAGCCCACGTGCCGCACTCACGGCCCAGGCACGGCCCAACACGCCTCGGGCCGTGCCGGGCCGGCCCGAAGGCACGATGGGCCGTCGTGCTTTTCCTCAGAATAAGTCTAAATTTCCTCCCTCCTATTGGGCTGTGACATATGTACAGCTACAAAAAGTCTATTTTACCTCCCTCTTCTTTGGGCTGGG
TATAGTTGGCCATG GGGCCGC CCGG                                                                                                                                                                                                                                                                                  
|||||||||||||| ||||||| ||||                                                                                                                                                                                                                                                                                  G
ATATCAACCGGTAT TCCGGGC CCGG                                                                                                                                                                                                                                                                                  
              -       T    GCTTCCGGGCCGGGTGCCGTGCGGAAAAACCGGGCCGGGTTCGTGCCGTGCCGGGCTGAACCCAGCCCGGGCACGACCGGGCCGGGCTGGCAGCCCGGCACGGACCCGGAGGGGTGGCCGTGCGACCCGACCGGGCCGTGCCAGCCCGGCCGGGCCGTGCTACCCGGCCGTCCGGTCCGGGCCATGTATTTCATACCCCTGATTTTTATCTGTATATTTACATTGACAGATTTCTTATCCCTGGAATTTATCTGAATAAAATCGATAAATATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3