SE2630207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7175
  • Oryza sativa
  • SE2630207
  • hAT
  • Hat60
  • Chr08:23426921-23427444
  • TAGGGGTG
  • TAGGGGTGGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
            GAAAAAGA  GAACCAAAAGACCGAACCGAAAAGATAGAGACCGAGACCGAAAAGATAGAGACCGAGGAACTCGGTCATCAATTTAGTCCTAGGTAGTGAAAGACCGAATTTTGTTCGGTCAATTCGGTTAGTCTTATCGGTTAACCGAATATACCGAAAAGACCGAATTAACAAAAAAATATCTAAATGCAACCTACAATCCATTAAGTTCAATAGGATTAAACTCTAATTTTCACATCCCTACTTCTT
TAGGGGTGGGTA        CT                                                                                                                                                                                                                                                
||||||||||||        ||                                                                                                                                                                                                                                                 
ATCCCCACCCGT        CT                                                                                                                                                                                                                                                
            AAGCCAGA  GGCTTTTAAAGCCAGAGCCAGAAGCCAGAAAGCCAGTAAAGTCAGAAACTTTTCACTTCTGGCTTAAAGTTACGTTTTTATAGTCCTGGCTTTTTAAGCCAGAGCCAGAGCCAGGACTGGCTTTAAGTTGTCGTAAAAGTATATACGTTTCTTTATTGTACCTTTTAAAAGTTGTGTTTTTAGTGTTTTTTTTTAAGCATTCGTGCATACTCATTTCTGTGAATAATCAAAGTACGGATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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