SE2630208

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7176
  • Oryza sativa
  • SE2630208
  • hAT
  • Hat60
  • Chr10:18589843-18590619
  • TAGGGGTG
  • TAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
           AAAATAAGACC  AC     AACT  A C  AAA   -----   GACCGAGACCGAGAAATTCGGTTAGTGATTCGATATCAGCCATCAAAAGACCGAATTTTTTTCGGGTAATTCGGTCATAGGCTTCCGTTAACCGAATTACCCCAAAAAACTGAAATTTGGCCTAACAGGTGTACGAGGCCTAATAAGCCCACTAAATAGAACAAACCCTAGAGGGAGCAACCGAGTAAAGTCGCTCTCAGGTCTCTCAGCGGCTCAGCCCCTCACTGCCTCGCATCCATCGCGTCGCCTCCACGCCTCCGCCTTCGCCTGCATCGCGCCGCCTCCGCCCTCCGCCTCCAGCACCGGCGCCGCCTCCGCCTCGACGTCGCCTCTGCCCTTCGCCTC
TAGGGGTGGGC           GA  CGAAG    GG C GA   GAC     CGA                                                                                                                                                                                                                                                                                                                                                         
|||||||||||           ||  |||||    || | ||   |||     |||                                                                                                                                                                                                                                                                                                                                                         C
ATCCCCACCCG           CA  AGCCA    TC T GA   TTT     GGG                                                                                                                                                                                                                                                                                                                                                         
           -----------  --     ---G  - -  ---   TTTAA   AAACCAAAGAGCCCATTAAGTCAGAAACCTTTCAGTCCTGGCTTAAAGTATTTTTTTTGAGTCCTGACCGTTTAAGCCAGAACCTGAGCCAGATTGGCTTTAAAGTCCTCTTACTTTTTAAAACTGTCGTGAAGGGAGAAAAATCTTTAAAAAGTGTCTGTATATATAGTGTTTTTATGGTTTGTTATCCGTTGTAGTTCGTGGTTTAATAGTGTCCTATCTAGAGTTCAGACTTGGAGTGTTCAGTGTTGTCGGTGTCTGGGTGCCATGTTCCGCCTCCGCCCTACCTCCGCGTCTCCACCCTACCTCCGCCTCCCGCCTCCGCCGCCGCCGCCACGACCGCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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