SE2630209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7177
  • Oryza sativa
  • SE2630209
  • hAT
  • Hat60
  • Chr08:15096089-15096802
  • TAGGGGTG
  • TAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
           AAAATAA       -       ACCG       AAGA   -   CCGA     -------  GGTTAGTAATTCGATCTCAGCTATGAAAATACCGAATTTTTTTCGGGCAATTCGGTTATTGTCTTTGGTTAACCGAGAAAACAGAATTGTGGCCCAATAGGCCTAGGAGGCCCAATAAGCCCAGTAAATTACTAAACCCTAGAAGCCACCACTACCACTCAGTCCTCACGAGGCATCCGCATCACGCCGCCTCCGCCTCCGATCCATCTCCATCACGCGTCGCGCCGCGGTCATTCACAGCATCGGCGCCGCCTCTGGCCAGCCCGCCTCCGTCGCATCCCTGACGAGCGCCGCCTC
TAGGGGTGGGC       GACTGAA CCGAAGA    AACCGAA    CCG AGA    GAAAT       TC                                                                                                                                                                                                                                                                                                         
|||||||||||       ||||||| |||||||    |||||||    ||| |||    |||||       ||                                                                                                                                                                                                                                                                                                         C
ATCCCCACCCG       AAGCCAG CTGGCTT    TTTAAGC    CAG GCC    AGAAG       GC                                                                                                                                                                                                                                                                                                         
           ------C       A       ----       ----   A   ----     CCAAAAA  CAGTAAAGCCAGAAACTTTTGAGTCCTGGCTTAAAGTAGGGTTTTTTGAGTCCTGGCCGTTTAAGTCAGAGCCAAAAAAGTCACAGCCAGAGCCAGACTGGCTTTAGCGACCTCTTCAAGCAGCCGAGCCCACTCCGGCACCGATGCCGACAACGTCGCCGCTTCCGGTGCGGCGACGAGCGATCCGCGCGGCGACTACCGCCGCGAGCAGCCCCGGCGCCGATGCCGACGGCGTCGCCTCCATCGCGGCTACGCCTGCCGCGGCGAGGAGCCCCGGTGCCGCCTCCGCCCTACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3