SE2630210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7178
  • Oryza sativa
  • SE2630210
  • hAT
  • Hat60
  • Chr01:25509194-25509683
  • TAGGGGTG
  • TAGGGGTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
          ----CAGAAA         --C  AAAAGACCGAGACCGAGACTGAGAAATTTGGTCATCAATTCGGTCCTAGGTAGTGAAAGACCGAATTTTGTTCGGTCAATTCGGTTAGTCTCCTCGGGTAACCGAATAGACCGAAAAGACCGAATTATCAAAAAATGTCTAAATACAATCTACAATCCACTATGTTTAATAGGATTAAACTCTAATTTTCACATCCCTACTTTTTCTAGGCATG
TAGGGGTGGG          AAGACCGAA   TG                                                                                                                                                                                                                      
||||||||||          |||||||||   ||                                                                                                                                                                                                                       
ATCCCCACCC          TTGGCTTTT   GC                                                                                                                                                                                                                      
          ATAAGCCAGA         AAA  CAGAGCCAAAAGCCAGAAAGCAAGAAAAGCTAGAAACTTTTCACTTTTGGTTTAAGTCACTTTTTTTACAGTTCTGGCTGTTTAAGCCAGAGCCAGAGCCAGGACTGGCTTTGAGTTGTTATAAAAGTATATACTTTTCTTTATTACCTTTAAAAGTTGTTTTTTAGTGTTTCTTTAAGCATTCGTAAATACTCATTTTTGAGAATAATCCAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3