Plant MITE

SE2630211

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7179
Oryza sativa
SE2630211
hAT
Hat62
Chr01:2132513-2132711
CAGGGGCG
CAGGGGCGGAGCTACATAGAGCTAGGGGGGT

Secondary structure and sequence

TSD TIR

5'

3'

              -       -CT        GCCCAG    CC   ---   --  AAAAATTTTAGCTATAGTTTGTCCATTTTCACCATATATATACTCTGTC
CAGGGGCGGAGCTA CATAGAG   AGGGGGGT      GAAC  GGT   TGA  AA                                                 
|||||||||||||| |||||||   ||||||||      ||||  |||   |||  ||                                                  
GTCCCCGCCTCGAT GTGTTTT   TCCCCCCA      AGGT  GAA   ATG  AT                                                 
              C       ACT        ------    --   CGA   AA  GAGATCAAACTTGGTTTAAATCGAACTATGCCCACGGATTTAAACTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630211

CAGGGGCGGAGCTACATAGAGCTAGGGGGGTGCCCAGGAACCCGGTTGAAAAAAAATTTTAGCTATAGTTTGTCCATTTTCACCATATATATACTCTGTCAGTTCAAATTTAGGCACCCGTATCAAGCTAAATTTGGTTCAAACTAGAGTAAAGTAAGCAAGTGGAACCCCCCTTCATTTTGTGCTAGCTCCGCCCCTG

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