Plant MITE

SE2630212

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7180
Oryza sativa
SE2630212
hAT
Hat62
Chr03:25303640-25303830
CAGGGGCG
CAGGGGCGGAGCTAGAATA

Secondary structure and sequence

TSD TIR

5'

3'

      C      A A   AAAT  A   GT     TC     C    ---------CT    ATTGAATCAAATTTAGCTTGATACATGTGCCTAAGCT
CAGGGG GGAGCT G ATA    GA GGG  TCCAC  GCTTG TTTA           CTGG                                     
|||||| |||||| | |||    || |||  |||||  ||||| ||||           ||||                                     T
GTCCCC CCTCGA C TAT    CT CCC  GGGTG  TGGGC AAGT           TATC                                     
      A      C A   CAAT  -   AC     CT     C    TTTTTTAATGA    AAATAGATAAAAGTGGTATGTATATGGGGTAGTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630212

CAGGGGCGGAGCTAGAATAAAATGAAGGGGTTCCACTCGCTTGCTTTACTCTGGATTGAATCAAATTTAGCTTGATACATGTGCCTAAGCTTAAACTGATGGGGTATATGTATGGTGAAAATAGATAAACTATAGTAATTTTTTTGAACCGGGTTCGTGGGCACCCTCTAACTATACCAGCTCCACCCCTG

Copy Cancel