Plant MITE

SE2630213

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7181
Oryza sativa
SE2630213
hAT
Hat62
Chr01:27299369-27299567
CAGGGGCG
CAGGGGCGGAGCTAG

Secondary structure and sequence

TSD TIR

5'

3'

               AGCGAAA   A   T      -----     C    --------    -  C        ATCGAG    AAC  -     GGTA   A   TT
CAGGGGCGGAGCTAG       TGG GGG GGTGCC     ACTTG TTAA        TTTA CT TACTTTAT      TTTA   TG ATGCG    CCT AGT  
|||||||||||||||       ||| ||| ||||||     ||||| ||||        |||| || ||||||||      ||||   || |||||    ||| |||   
GTCCCCGCCTCGATC       ATC CCC CCACGG     TGGGC AGTT        AAAT GA ATGAAGTA      AAGT   AC TACGT    GGA TTA  
               ATATATA   -   -      ATCCT     C    TTTTTTTA    C  T        -GATAA    GTT  A     -GGG   G   TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630213

CAGGGGCGGAGCTAGAGCGAAATGGAGGGTGGTGCCACTTGCTTAATTTACTCTACTTTATATCGAGTTTAAACTGATGCGGGTACCTAAGTTTGTATTGAGGGGGTGCATACATTGTGAAAATAGATGAAGTATAGCTAAAATTTTTTTTTGACCGGGTTCCTAGGCACCCCCCTAATATATACTAGCTCCGCCCCTG

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