SE2630214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7182
  • Oryza sativa
  • SE2630214
  • hAT
  • Hat62
  • Chr01:37171455-37172211
  • CAGGGGCG
  • CAGGGGCGAAGCTACATGCAG

Secondary structure and sequence

TSD    TIR
5'



3'
   G          CAT    CTAT      TCCTAG       -  TAA   AAAA  TTTA  TATGGTTACCCCATCTCCACCATATATGCACCCCCCTCATCCCAACAATGTGTACCCCCAAGCAGACCATCAGGCCGAGCAAAGGTAACAAGGCCAACAGAGAAGCGCACAGCCATGAGGATTTTCTTGTGGTGCAGCATGTTTAGTTGACAAATTTGCCCTGCATAACAGCGTTGTTAACTACTTCAAGGTGAAACAGAATGCACTCGGTGGCCAGCCACAGCCTATGGTCTTATCACCTATTAATCGTAGCAGGCAAGGGGTGACGTCAAAAGAAAGTTTTGCAATTTGCTTTCATAGTTTCATTCCATTTTTTCGATA
CAG GGCGAAGCTA   GCAG    GAGGGT      GCACCTG GG   GAG    GT    GC                                                                                                                                                                                                                                                                                                                                 
||| ||||||||||   ||||    ||||||      ||||||| ||   |||    ||    ||                                                                                                                                                                                                                                                                                                                                 A
GTC CCGCTTCGAT   CGTT    CTCCCA      CGTGGTG TA   TCA    TC    GT                                                                                                                                                                                                                                                                                                                                 
   A          -CT    TTGT      ---CCA       A  ---   ----  ----  TATATGATGGTACAAGCTTTTACTATATGCATGCTGGATAGTACAAAATAGTTTCTTGTAATACCATTTGTTATCATTTTGGTAACTAAAGTCATAGATGTAATTGTACTTGCTCACTATATTCTTGCTTTTGAATCGCCATTTAATATTTTGATGAACGGTTTTACCCTTAAGGGTTACTGCTATGAATAGTCGCGTCACAGGACTTCTTCAATTCTAATTTTAGTGTTGGTTATCCACCGGTTTTAACCTCTTGATGAGCAGGTTGTAGTCGTAGAGTTCCTTTTTTTTTCTGTTTTGTTGAATTAAAAAGCAAACTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End