Plant MITE

SE2630215

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7183
Oryza sativa
SE2630215
hAT
Hat63
Chr01:3871197-3871399
CAGTGGCG
CAGTGGCGGAGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

           C   GATAAAATTATA         -  TCAGACTTTTGGGCCTTCTAACAATCTCAGATAAAGTCTATTTTAGCCCCCTTTAATAGATATATGGA
CAGTGGCGGAG CAG            GTGGGGGCT CC                                                                    
||||||||||| |||            ||||||||| ||                                                                    T
GTCACCGCCTC GTC            CACCCCCGA CC                                                                    
           T   -----------G         C  CCCAGATATCTGGGGGATGGGGGATTATCTAGTAATCTCGGGGGTAATTCTGGGGGGGATTTTAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630215

CAGTGGCGGAGCCAGGATAAAATTATAGTGGGGGCTCCTCAGACTTTTGGGCCTTCTAACAATCTCAGATAAAGTCTATTTTAGCCCCCTTTAATAGATATATGGATTTAAATTTTAGGGGGGGTCTTAATGGGGGCTCTAATGATCTATTAGGGGGTAGGGGGTCTATAGACCCCCCAGCCCCCACGCTGTCTCCGCCACTG

Copy Cancel