SE2630216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7184
  • Oryza sativa
  • SE2630216
  • hAT
  • Hat63
  • Chr05:20431532-20431794
  • CACGGGCG
  • GGCGGAGGCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CACG  C    G   ----CGT        A    TTTAGACTCCCCTACACCCTAATATAACATTAGAGCCCCCTTAATACCCCTCTAAAATTCTAATCCATATATTTATAGATGAGGGGCTAATATAGACTT
    GG GGAG CAG       GGGGGCGG GGTC                                                                                                   
    || |||| |||       |||||||| ||||                                                                                                    
    CC CCTC GTC       AATATCGC CCCT                                                                                                   
GTCA  A    G   CTATTTT        -    GATTTGTTTTTACTGATTCTCGTTGATTCTCTCTAAATCCCAACCCAATCTTAAAAAACCCGGAAGAATCGGAAAACCCGGAAGATTGTTGGAGTTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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