SE2630217

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7185
  • Oryza sativa
  • SE2630217
  • hAT
  • Hat64
  • Chr12:25656575-25657015
  • CAGTGGCG
  • CAGTGGCGAAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
              G -      A    G  -  TG  ATCTACGAGACGTGGTAACTCACTTAAGGTTCGGTGAACAGTGACATTGTAGCGTTGATGTATGATCACTAACTCGACATCATACATGTTATAGCGATTAGCTAGAAGAGAGAATGAGAACCTATAGATCATAATTTGCCAATTTAAACAGTTTGTTCCATGATTTTAATTGGAGTCTTGCAATC
CAGTGGCGAAGCCA G ATTTAG GACG GG GG  CC                                                                                                                                                                                         
|||||||||||||| | |||||| |||| || ||  ||                                                                                                                                                                                         A
GTCACCGCTTCGGT G ATCCCC GGTC CC CC  CG                                                                                                                                                                                         
              G C      -    -  T  --  GTTGTGGGGGGATTGGGGATACACTGGAGGGGAGGGGAGAGAAGAGGGTTTCTATTAATCGGGAATATTAGATCGGTAATTAATGTAGTAATCAATGCCTACTCTGATTGATATATCCTGTTGACGGATCGATATATATATCCTGAATACTTTACTGAATCAATTGACTAAATAGTAAAATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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