SE2630218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7186
  • Oryza sativa
  • SE2630218
  • hAT
  • Hat64
  • Chr12:1974694-1975168
  • CAGTGGCG
  • CAGTGGCGAAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
               --      A      GGGGTGCCATCTACGAGACGTGATAACTCACTTAAGGTTCGGTGAACAGTGATATTGTAGCGTTGATGTATGATCGCTAACTCGACATCATACATGTTATAGCGATTAGCTACAAGAGAGAATGAGAACCCATAGATCATAATTTGCCAATTTAAAATTCAGTGATATTTTTAATATATGGATGATTAAACAGTTTGTTCCATGATTTT
CAGTGGCGAAGCCAG  GATTTA AGATGG                                                                                                                                                                                                                 
|||||||||||||||  |||||| ||||||                                                                                                                                                                                                                  
GTCACCGCTTCGGTG  ATCCCC GGTCCC                                                                                                                                                                                                                 
               GC      -      TCCCGGTTGTGGGGGGATTGGGGATACACTGGAGGGGAGGGGAGAGAAGAGGGTTCCTATTAATCGGGAATATTAGATCGTTAATTAATATAATAATCAATGCCTACTCTGATTGATATATCCTGTTGACGGATCGATATATATATCCTGAATACTTTACTGAATCAATTGACTAAATAGTAAAATTTTTACTAACGTTCTGAGGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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