Plant MITE

SE2630219

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7187
Oryza sativa
SE2630219
hAT
Hat7
Chr08:4973151-4973385
CAGGGTTT
CAGGGTTTCCCA

Secondary structure and sequence

TSD TIR

5'

3'

        C   A              GGTTACCGCACCCCGGCGGTAAGCAAGGTTACCACGCGGTAACCGCGGTAACCGTGAAAAACCGTACAAAACCGTGCAAAATTTATCAAAA
CAGGGTTT CCA ACCGCCGGGGTCGG                                                                                           
|||||||| ||| ||||||||||||||                                                                                            
GTCCCAAG GGT ATGGTGGCCATTGG                                                                                           
        T   -              CGCGCCAACGACCCGAATGGCGCCCCCATACCACTATATTTATGGCGCCATTGGAGGAATTTAAGTTTATTTAAATTTTTTATTAAATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630219

CAGGGTTTCCCAAACCGCCGGGGTCGGGGTTACCGCACCCCGGCGGTAAGCAAGGTTACCACGCGGTAACCGCGGTAACCGTGAAAAACCGTACAAAACCGTGCAAAATTTATCAAAAATTTAAATTATTTTTTAAATTTATTTGAATTTAAGGAGGTTACCGCGGTATTTATATCACCATACCCCCGCGGTAAGCCCAGCAACCGCGCGGTTACCGGTGGTATGGTGAACCCTG

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