SE2630220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7188
  • Oryza sativa
  • SE2630220
  • hAT
  • Hat66
  • Chr08:16464884-16465051
  • CAGTGGCG
  • CAGTGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
   T      GCCAG         A   G -   GCTAAAGTAGGGTTTAACTAGTGAGTTATTTATTTTTTCCTAAATTTACATGGT
CAG GGCGGA     AAGTTACTA AGA T AGG                                                      
||| ||||||     ||||||||| ||| | |||                                                       
GTC CCGCCT     CCGTCCGGA TCC C TCG                                                      
   C      -----         -   - A   ATCCCGAACCCGGGATCCGGACGGAGGTTTTAGTACCTGTTTAATACAATTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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