SE2630222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7190
  • Oryza sativa
  • SE2630222
  • hAT
  • Hat68
  • Chr07:23695939-23696527
  • TAGGGGTG
  • TAGGGGTGAAAACG

Secondary structure and sequence

TSD    TIR
5'



3' 
                  -  GTATTTCCCGCCCGCCCGTCCGTGATCACATTATTTCAGGACAAATTCGGGTACCCGGGACTTTTCACGGATATCGGGTCCGAATAGGTATTTTTTGACGGATACAAGATCATGTTCGGGAACGTAGTATTCAACGGATTTAGATTATCCGGTAAAAAATCCGGGTATTACCCGGATAGTTATACGGATCTCTTACCCCTATTATGTTTTTGTGAGGCACTTTTTGGTACAATATATTGATTCTACTATGATGTATTGTACCCTATTTATTTTC
TAGGGGTGAAAACGGGGC GG                                                                                                                                                                                                                                                                                  
|||||||||||||||||| ||                                                                                                                                                                                                                                                                                   
ATCCCCACTTTTGCCCAG AC                                                                                                                                                                                                                                                                                  
                  C  AAGCCAGTCTGGAATGGGAAGGGTATAGGATTGGGTATAAAATATTAGCCTTAGCCCAGCCTGTGTCTATCACGACTTATGCCTATGTTTGAGTCTATTACAGCCCGTTTTTATGCCTTGCTTATGCATGGTTTTACCTATGCATGTGATAGAGCCAATGTTTATAAATAAGCCTATAGTTCAGCTTCGTTATTAGAATATATAGTGTATCTGTTATTGATAAGTTGTTAAGGTATATAGGTATTATGCTAATATAATCCGATAATCCTGGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3