SE2630223

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7191
  • Oryza sativa
  • SE2630223
  • hAT
  • Hat69
  • Chr12:4139234-4139785
  • TAGGGATG
  • TAGGGATGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
            ---                C     GGGCTGGAACGCCCCCGACCCCAACCCCCGACTTCACCCCCCGCCCCCGGCCCCGACCATGGATGCGGGTTGAAAACATCACCCGTCCCCGACCCCTGCGGGGCCCCGCAACCCGACCGGGGCCCCGCATTGGTAGCATCTCCATCCAATCAGCTCAAAAAATACAACACAATCATCATTTCAGCAAAAACAAATATTGTGCATAATTAACACACCATAAAAAATAGCATGAATACTTAAA
TAGGGATGGCAA   CGGGGCGGGGCGGGGG GGGTT                                                                                                                                                                                                                                                 
||||||||||||   |||||||||||||||| |||||                                                                                                                                                                                                                                                  
ATCCCTACCGTT   GGGGGCGCCCCGGCCC AGGGG                                                                                                                                                                                                                                                 
            AAA                -     ACGCCCCTGGGCGGGGATGCCCCCGTCCCCGTCCCCTCTAAAAGCTGGGCGCCCACGCAGCCCATGCCCCGGGGCGTAAACCCGCCCCTCCCTTGCCCCCTGATTAAAGTGGGTGTCCATTGGGCGCCCCGGGGCCCCCATGTATATTTGGAGTTTCATATCCAGTTTCTTTCGGTTTTTTGGGTACATTATCGGTTACATTTGAATGTCGATTAAGGAACCGACTTAAAAATACTACTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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