SE2630224

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7192
  • Oryza sativa
  • SE2630224
  • hAT
  • Hat69
  • Chr11:9423180-9423963
  • TAGGGATG
  • TAGGGATGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
     A       TTC         -  CGGGTTCAATTTTTG       ---      GCGGGGT GGGGCCCCGTTTTTTTGCGGGGAGGGGACGGGGGAGGCATTTCACCCGCGGGGCCCCGGAGGATGTATATTAAACTTTAAAATGTAGTCCATGTAAGACCCAAAAGAGCCCAACCCAAGAAAAGTCTAAAATATAAAAATAAAAGAGCCCAACCCTAACCTTATCCTCTTCCCTCTCCCCAATCTCCTCTCCCCGTCACCCTCACACCACACAGGCGGCGGCGGCGTTGACCGCCAGGCACGGGCGGTGGCGGCGACCAGGCGCGGGTGGCGGAGTCGGCGACCAGGCGCGGCAGCGGCGTTGGCCAGGCGCGGGCGGCGGCGGCGACGTCGGCCAGGC
TAGGG TGGCAAT   CCCCGCGGG GG               ACCCGCG   GGTGAG       C                                                                                                                                                                                                                                                                                                                                                   
||||| |||||||   ||||||||| ||               |||||||   ||||||       |                                                                                                                                                                                                                                                                                                                                                   G
ATCCC ACCGTTG   CCCCGCCCA CC               CCTGCCC   CCGCCC       T                                                                                                                                                                                                                                                                                                                                                   
     A       ---         A  ---------------       AAC      ------- TGCGGGGGCGGGGGCGAGGGGCTGAAGAGGGGGGCTGGGGCTGGGGTGTCTCCACCAGCCACCTTTTGCAGTGGGCGGGGGCAGGGGCGTCCCCTGGGCTGCCCACTCGCCCCGGGGCGTGTTGGGCCGATCTTCTGCTGCTCCGCTCGGCGCCGCCTGCTCTACTCCGTTCCGAGCGTGATGGATCGGTAGCTACCTGTTGCCGCTGCTCCGCTCGGCGGCGACGGGCGTGAACCGGACCGGAAGCGGCGGGCGCGGACCGGAAGTGTCGGCGGCGGGCGCGGGACCGGCTGCGGCGGCGGGCGCGTCCAGCGCGGACCGGCAGCTACGACGGCAGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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