SE2630225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7193
  • Oryza sativa
  • SE2630225
  • hAT
  • Hat70
  • Chr09:17924305-17924508
  • CAGGGTTT
  • CAGGGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
        TCAATTTCAAAA     TTTTATACCGGGGGTCATCGAAATTTCAGAAATTTTGAGCCGAAATTATTTGAAAATTTGACTTAAATTTGATTAAAATTTG
CAGGGTTT            TTGGT                                                                                  
||||||||            |||||                                                                                  A
GTCCCAAA            TTTAA                                                                                  
        -----------C     AACCAAGTCTTTAAAGTGGGGGGTGGTCGTACGAGTTTAGAGCGGGTTTTAAAAGAGAAAAAAAATATAAAAAATTTAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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