SE2630226

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7194
  • Oryza sativa
  • SE2630226
  • hAT
  • Hat70
  • Chr01:10340773-10340995
  • CAGTGTTT
  • CAGTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
   T    -     -    GTTCGAAATTTCACCCCACACCGAAATGTTCATATCTCGCCCGAAAATTTCGGTTTTTTGCAATTTTTTGTGAATTTGGTCAAATTTTATTCA
CAG GTTT GAAAT TTCG                                                                                             
||| |||| ||||| ||||                                                                                             A
GTC CAAA TTTAA GCTT                                                                                             
   C    G     A    TAATCCCAAAGATGGCTCCCCCTCGCTATCTTGGCTTTAAAGCCTTAAAAAAGCATGCTTTAAAAAACTTTAAAACTGACTAAAACTTACCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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