Plant MITE

SE2630227

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7195
Oryza sativa
SE2630227
hAT
Hat70
Chr09:14720117-14720336
CAGGGTTT
CAGGGTTT

Secondary structure and sequence

TSD TIR

5'

3'

        ---       --    ATTG    --   T   AGGGGTGACCGTAATTTCGGGAATTTCTGGCTGAAATTATTTGAAAATTTGACTGAATTTGAATAAAATTTGACC
CAGGGTTT   TCAATTT  CGAA    GATT  TTA GCC                                                                           
||||||||   |||||||  ||||    ||||  ||| |||                                                                            
GTCCCAAA   TAGGGCC  GCTT    TAAA  CTT TAA                                                                           
        CTT       AA    ----    GA   -   AGTTATTAAAGCGGGGATGGCCGTACAAGTTTAGAGCGGGCTTTACAAACAAAAAAACATTAAAAAATGCTTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630227

CAGGGTTTTCAATTTCGAAATTGGATTTTATGCCAGGGGTGACCGTAATTTCGGGAATTTCTGGCTGAAATTATTTGAAAATTTGACTGAATTTGAATAAAATTTGACCAAATTCGTAAAAAATTACAAAAAAACAAACATTTCGGGCGAGATTTGAACATGCCGGTAGGGGCGAAATTATTGAAATTTCAGAAATTTCGAACCGGGATTTCAAACCCTG

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