SE2630228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7196
  • Oryza sativa
  • SE2630228
  • hAT
  • Hat71
  • Chr07:18573199-18573389
  • CAGGGGGC
  • GGGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CA      -    AT --     AAAA       AGTGCTCAATTACACAGTTTCTTCAATCTCCAGCCATATAAGGACCTTTAATTTATCATTCATGGT
  GGGGGC AGAT  A  GAAAC    AATTGAG                                                                  
  |||||| ||||  |  |||||    |||||||                                                                  G
  TCCCCG CTAG  G  GCACT    CACGTCC                                                                  
 G      C    -- TT     ----       CCCCAAGCTCAGGGGGACGTGGGTGTTCTAGATACCTATGGGGACCTCGTGGGGGAAGTTAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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